Jérôme LEMOINE

Professor

Contact

jerome.lemoine[@]isa-lyon.fr

Research

Methodological and instrumental developments in mass spectrometry and hyphenated techniques for the relative or absolute multiplexed quantification of proteins in biological matrices : from proteomic discovery to clinical applications

improved detection specificity by coupling laser photodissociation to mass spectrometry or MRM3

increased multiplexing capability

Biography

Jérôme Lemoine (M) is Professor at Lyon 1 University, head of the bioMolecular Mass Spectrometry team in the Institut des Sciences Analytiques. Jérôme Lemoine was awarded a PhD from the University of Lille in 1993 for his work on high-energy fragmentation pathways of glycans by tandem mass spectrometry.
He was appointed an Associate Professor at Lille University in 1993, while following an internship of few months in the lab of Keith Jennings (Warwick University), then appointed a Professor of Biochemistry in 2001.
He moved to Lyon in 2004 with the objective of developing a multidisciplinary team in the field of biological mass spectrometry. Since then, his research topics have been focused on interdisciplinary mass spectrometry developments to improve the structural and quantitative analysis of biomolecules in the context of human diseases such as Alzheimer, cancer or high blood pressure.
He has been involved in the supervision or co-supervision of 15 PhD sudents.
Jérôme Lemoine has published 98 papers (H factor 30), filled 3 patents, and is co-founder of the start-up company AnaQuant.

Keywords

targeted mass spectrometry, laser photodissociation, ion mobility, protein/peptide biomarkers, clinical studies

Publications

Articles in peer-review journals since 2011

Publications HAL de Jerome,Lemoine

2020

Journal articles

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Sophie Ayciriex, Romain Carrière, Chloé Bardet, Yves Le Blanc, Arnaud Salvador, et al.. Streamlined Development of Targeted Mass Spectrometry‐Based Method Combining Scout‐MRM and a Web‐Based Tool Indexed with Scout Peptides. Proteomics, Wiley-VCH Verlag, 2020, pp.1900254. ⟨10.1002/pmic.201900254⟩. ⟨hal-02436928⟩
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2018

Journal articles

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Aurore Charnot, Duarte Gouveia, Sophie Ayciriex, Jérôme Lemoine, Jean Armengaud, et al.. On-Line Solid Phase Extraction Liquid Chromatography-Mass Spectrometry Method for Multiplexed Proteins Quantitation in an Ecotoxicology Test Specie: Gammarus fossarum. Journal of Applied Bioanalysis, Betasciencepress Publishers, 2018, 4 (3), pp.81-101. ⟨10.17145/jab.18.012⟩. ⟨hal-01860702⟩
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Tiphaine Cecchini, Eun-Jeong Yoon, Yannick Charretier, Chloé Bardet, Corinne Beaulieu, et al.. Deciphering Multifactorial Resistance Phenotypes in Acinetobacter baumannii by Genomics and Targeted Label-free Proteomics. Molecular and Cellular Proteomics, American Society for Biochemistry and Molecular Biology, 2018, 17 (3), pp.442 - 456. ⟨10.1074/mcp.RA117.000107⟩. ⟨hal-01767739⟩
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Lény Garcia, Marion Girod, Magali Rompais, Philippe Dugourd, Christine Carapito, et al.. Data-Independent Acquisition Coupled to Visible Laser-Induced Dissociation at 473 nm (DIA-LID) for Peptide-Centric Specific Analysis of Cysteine-Containing Peptide Subset. Analytical Chemistry, American Chemical Society, 2018, 90 (6), pp.3928 - 3935. ⟨10.1021/acs.analchem.7b04821⟩. ⟨hal-01767310⟩
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Mohammad Halim, Luke Macaleese, Jérôme Lemoine, Rodolphe Antoine, Philippe Dugourd, et al.. Ultraviolet, Infrared, and High-Low Energy Photodissociation of Post-Translationally Modified Peptides. Journal of The American Society for Mass Spectrometry, Springer Verlag (Germany), 2018, 29 (2), pp.270 - 283. ⟨10.1007/s13361-017-1794-9⟩. ⟨hal-01767664⟩
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2017

Journal articles

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Lény Garcia, Jérôme Lemoine, Philippe Dugourd, Marion Girod. Fragmentation patterns of chromophore-tagged peptides in visible laser induced dissociation. Rapid Communications in Mass Spectrometry, Wiley, 2017, 31 (23), pp.1985 - 1992. ⟨10.1002/rcm.7984⟩. ⟨hal-01646160⟩
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Aurore Charnot, Duarte Gouveia, Jean Armengaud, Christine Almunia, Arnaud Chaumot, et al.. Multiplexed assay for protein quantitation in the invertebrate Gammarus fossarum by liquid chromatography coupled to tandem mass spectrometry . Analytical and Bioanalytical Chemistry, Springer Verlag, 2017, 409 (16), pp.3969-3991. ⟨10.1007/s00216-017-0348-0⟩. ⟨hal-01539762⟩
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Blandine Rougemont, Sebastien Gallo, Sophie Ayciriex, Romain Carrière, Hubert Hondermarck, et al.. Scout-MRM: Multiplexed Targeted Mass Spectrometry-Based Assay without Retention Time Scheduling Exemplified by Dickeya dadantii Proteomic Analysis during Plant Infection. Analytical Chemistry, American Chemical Society, 2017, 89 (3), pp.1421-1426 ⟨10.1021/acs.analchem.6b03201⟩. ⟨hal-01518912⟩
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2016

Journal articles

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Alexandra Gaubert, Jéremy Jeudy, Blandine Rougemont, Claire Bordes, Jérôme Lemoine, et al.. Identification and absolute quantification of enzymes in laundry detergents by liquid chromatography tandem mass spectrometry. Analytical and Bioanalytical Chemistry, Springer Verlag, 2016, 408 (17), pp.4669-4681. ⟨10.1007/s00216-016-9550-8⟩. ⟨hal-01356216⟩
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Mohammad A Halim, Marion Girod, Luke Macaleese, Jérôme Lemoine, Rodolphe Antoine, et al.. 213 nm Ultraviolet Photodissociation on Peptide Anions: Radical-Directed Fragmentation Patterns. Journal of The American Society for Mass Spectrometry, Springer Verlag (Germany), 2016, 27 (3), pp.474-486. ⟨10.1007/s13361-015-1297-5⟩. ⟨hal-01356287⟩
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Blandine Rougemont, Catherine Fonbonne, Jérôme Lemoine, Vanessa Bourgeaux, Arnaud Salvador. Liquid chromatography coupled to tandem mass spectrometry for the analysis of inositol hexaphosphate after solid-phase extraction. Journal of Liquid Chromatography and Related Technologies, Taylor & Francis: STM, Behavioural Science and Public Health Titles, 2016, 39 (8), pp.408-414. ⟨10.1080/10826076.2016.1169427⟩. ⟨hal-01356192⟩
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Mohammad A Halim, Marion Girod, Luke Macaleese, Jérôme Lemoine, Rodolphe Antoine, et al.. Combined Infrared Multiphoton Dissociation with Ultraviolet Photodissociation for Ubiquitin Characterization. Journal of The American Society for Mass Spectrometry, Springer Verlag (Germany), 2016, 27 (9), pp.1435-1442. ⟨10.1007/s13361-016-1419-8⟩. ⟨hal-01344631⟩
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2015

Journal articles

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Blandine Rougemont, Romain Simon, Romain Carrière, Jordane Biarc, Catherine Fonbonne, et al.. Absolute quantification of dengue virus serotype 4 chimera vaccine candidate in Vero cell culture by targeted mass spectrometry. Proteomics, Wiley-VCH Verlag, 2015, 15 (19), pp.3320-3330. ⟨10.1002/pmic.201500101⟩. ⟨hal-01229336⟩
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Yannick Charretier, Olivier Dauwalder, Christine Franceschi, Elodie Degout-Charmette, Gilles Zambardi, et al.. Rapid bacterial identification, resistance, virulence and type profiling using selected reaction monitoring mass spectrometry. Scientific Reports, Nature Publishing Group, 2015, 5, pp.Article Number: 13944. ⟨10.1038/srep13944⟩. ⟨hal-01229864⟩
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Kévin Jeanne Dit Fouque, Hélène Lavanant, Séverine Zirah, Jérôme Lemoine, Sylvie Rebuffat, et al.. Gas-phase conformations of capistruin - comparison of lasso, branched-cyclic and linear topologies. Rapid Communications in Mass Spectrometry, Wiley, 2015, 29 (15), pp.1411-1419. ⟨10.1002/rcm.7231⟩. ⟨hal-01186671⟩
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Jordane Biarc, Romain Simon, Catherine Fonbonne, Jean-François Léonard, Jean-Charles Gauthier, et al.. Absolute quantification of podocalyxin, a potential biomarker of glomerular injury in human urine, by liquid chromatography-mass spectrometry. Journal of Chromatography A, Elsevier, 2015, 1397, pp.81-85. ⟨10.1016/j.chroma.2015.04.003⟩. ⟨hal-01164871⟩
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Marion Girod, Zeljka Sanader, Marin Vojkovic, Rodolphe Antoine, Luke Macaleese, et al.. UV Photo-dissociation of proline-containing peptide ions: Insights from molecular dynamics. Journal of The American Society for Mass Spectrometry, Springer Verlag (Germany), 2015, 26 (3), pp.432-443. ⟨10.1007/s13361-014-1038-1⟩. ⟨hal-01345987⟩
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https://hal.archives-ouvertes.fr/hal-01345987/file/peptPro.pdf https://hal.archives-ouvertes.fr/hal-01345987/file/Supporting%20material%20peptPro.pdf BibTex
ref_biblio
Mohammad A Halim, Marion Girod, Luke Macaleese, Jérôme Lemoine, Rodolphe Antoine, et al.. 213 nm Ultraviolet Photodissociation on Peptide Anions: Radical-Directed Fragmentation Patterns. Journal of The American Society for Mass Spectrometry, Springer Verlag (Germany), 2015, ⟨10.1007/s13361-015-1297-5⟩. ⟨hal-01344628⟩
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2014

Journal articles

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Marion Girod, Marjan Krstić, Rodolphe Antoine, Luke Macaleese, Jérôme Lemoine, et al.. Formation and characterisation of the silver hydride nanocluster cation [Ag3H2((Ph2P)(2)CH2)](+) and its release of hydrogen. Chemistry - A European Journal, Wiley-VCH Verlag, 2014, 20 (50), pp.16626-16633. ⟨10.1002/chem.201404110⟩. ⟨hal-01230129⟩
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Rodolphe Antoine, Jérôme Lemoine, Philippe Dugourd. Electron photodetachment dissociation for structural characterization of synthetic and bio-polymer anions. Mass Spectrometry Reviews, Wiley, 2014, 33 (6), pp.501-522. ⟨10.1002/mas.21402⟩. ⟨hal-00954983⟩
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Jordane Biarc, Philippe Gonzalo, Ivan Mikaelian, Laurent Fattet, Mathieu Deygas, et al.. Combination of a discovery LC-MS/MS analysis and a label-free quantification for the characterization of an epithelial-mesenchymal transition signature. Journal of Proteomics, Elsevier, 2014, 110, pp.183-194. ⟨10.1016/j.jprot.2014.05.026⟩. ⟨hal-01230272⟩
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Romain Simon, Sébastien Passeron, Jérôme Lemoine, Arnaud Salvador. Hydrophilic interaction liquid chromatography as second dimension in multidimensional chromatography with an anionic trapping strategy: application to prostate-specific antigen quantification.. Journal of Chromatography A, Elsevier, 2014, 1354, pp.75-84. ⟨10.1016/j.chroma.2014.05.063⟩. ⟨hal-01071821⟩
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Quentin Enjalbert, Marion Girod, Jérémy Jeudy, Jordane Biarc, Romain Simon, et al.. Combined collision-induced dissociation and photo-selected reaction monitoring mass spectrometry modes for simultaneous analysis of coagulation factors and estrogens. Journal of Pharmaceutical Analysis, Elsevier B.V. on behalf of Xi'an Jiaotong University, 2014, 4 (3), pp.183-189. ⟨10.1016/j.jpha.2013.09.004⟩. ⟨hal-01356364⟩
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Romain Simon, Jérôme Lemoine, Catherine Fonbonne, Aurore Jaffuel, Jean-François Léonard, et al.. Absolute quantification of podocin, a potential biomarker of glomerular injury in human urine, by liquid chromatography-multiple reaction monitoring cubed mass spectrometry. Journal of Pharmaceutical and Biomedical Analysis, Elsevier, 2014, 94, pp.84-91. ⟨10.1016/j.jpba.2014.01.019⟩. ⟨hal-00954969⟩
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Jéremy Jeudy, Arnaud Salvador, Romain Simon, Aurore Jaffuel, Catherine Fonbonne, et al.. Overcoming biofluid protein complexity during targeted mass spectrometry detection and quantification of protein biomarkers by MRM cubed (MRM3). Analytical and Bioanalytical Chemistry, Springer Verlag, 2014, 406 (4), pp.1193-1200. ⟨10.1007/s00216-013-7266-6⟩. ⟨hal-00954963⟩
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David Ropartz, Jérôme Lemoine, Alexandre Giuliani, Yann Bittebiere, Quentin Enjalbert, et al.. Deciphering the structure of isomeric oligosaccharides in a complex mixture by tandem mass spectrometry: photon activation with vacuum ultra-violet brings unique information and enables definitive structure assignment.. Analytica Chimica Acta, Elsevier Masson, 2014, 807, pp.84-95. ⟨10.1016/j.aca.2013.11.018⟩. ⟨hal-00954660⟩
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Marion Girod, Quentin Enjalbert, Claire Brunet, Rodolphe Antoine, Jérôme Lemoine, et al.. Structural basis of protein oxidation resistance: a lysozyme study.. PLoS ONE, Public Library of Science, 2014, 9 (7), pp.e101642. ⟨10.1371/journal.pone.0101642⟩. ⟨hal-01071810⟩
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Marion Girod, Jordane Biarc, Quentin Enjalbert, Arnaud Salvador, Rodolphe Antoine, et al.. Implementing visible 473 nm photodissociation in a Q-Exactive mass spectrometer: towards specific detection of cysteine-containing peptides. The Analyst, JSTOR, 2014, 139 (21), pp.5523-5530. ⟨10.1039/C4AN00956H⟩. ⟨hal-01345989⟩
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2013

Journal articles

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Le Thi Nga, Jean Christophe Poully, Frédéric Lecomte, Nicolas Nieuwjaer, Bruno Manil, et al.. Gas-phase structure of amyloid-β (12 - 28) peptide investigated by infrared spectroscopy, electron capture dissociation and ion mobility mass spectrometry.. Journal of The American Society for Mass Spectrometry, Springer Verlag (Germany), 2013, 24 (12), pp.1937-1949. ⟨10.1007/s13361-013-0722-x⟩. ⟨hal-00924163⟩
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Aurore Jaffuel, Jérôme Lemoine, Catherine Aubert, Romain Simon, Jean-Francois Léonard, et al.. Optimization of liquid chromatography-multiple reaction monitoring cubed mass spectrometry assay for protein quantification: Application to aquaporin-2 water channel in human urine. Journal of Chromatography A, Elsevier, 2013, 1301, pp.122-130. ⟨10.1016/j.chroma.2013.05.068⟩. ⟨hal-00860529⟩
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Floriane Pailleux, Pascal Vachon, Jérôme Lemoine, Francis Beaudry. Targeted liquid chromatography quadrupole ion trap mass spectrometry analysis of tachykinin related peptides reveals significant expression differences in a rat model of neuropathic pain.. Neuropeptides, Elsevier, 2013, 47 (4), pp.261-271. ⟨10.1016/j.npep.2013.02.001⟩. ⟨hal-00851139⟩
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Quentin Enjalbert, Claire Brunet, Arnaud Vernier, Abdul-Rahman Allouche, Rodolphe Antoine, et al.. Vacuum ultraviolet action spectroscopy of polysaccharides.. Journal of The American Society for Mass Spectrometry, Springer Verlag (Germany), 2013, 24 (8), pp.1271-1279. ⟨10.1007/s13361-013-0657-2⟩. ⟨hal-00864641⟩
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Quentin Enjalbert, Marion Girod, Romain Simon, Jéremy Jeudy, Fabien Chirot, et al.. Improved detection specificity for plasma proteins by targeting cysteine-containing peptides with photo-SRM. Analytical and Bioanalytical Chemistry, Springer Verlag, 2013, 405 (7), pp.2321-2331. ⟨10.1007/s00216-012-6603-5⟩. ⟨hal-00875276⟩
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Marie Pérot-Taillandier, Séverine Zirah, Quentin Enjalbert, Rodolphe Antoine, Jérôme Lemoine, et al.. Prompt and slow electron-detachment-dissociation/electron-photodetachment-dissociation of a 21-mer Peptide.. Chemistry - A European Journal, Wiley-VCH Verlag, 2013, 19 (1), pp.350-357. ⟨10.1002/chem.201202578⟩. ⟨hal-00770793⟩
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Floriane Pailleux, Jérôme Lemoine, Francis Beaudry. Investigation of the metabolic biotransformation of substance P in liver microsomes by liquid chromatography quadrupole ion trap mass spectrometry. Biomedical Chromatography, Wiley, 2013, 27 (1), pp.39-47. ⟨10.1002/bmc.274⟩. ⟨hal-00875709⟩
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Marion Girod, Rodolphe Antoine, Jérôme Lemoine, Philippe Dugourd, Laurence Charles. Structural characterization of a poly(methacrylicacid)/poly(methylmethacrylate) copolymer by activated electron photo-detachment dissociation. International Journal of Mass Spectrometry, Elsevier, 2013, 333, pp.27-33. ⟨10.1016/j.ijms.2012.08.018⟩. ⟨hal-00875704⟩
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Arnaud Vernier, Fabien Chirot, Rodolphe Antoine, Arnaud Salvador, Jean-Philippe Charrier, et al.. Alternative representation for the stability diagram of quadrupole ion traps upon additional quadrupolar excitation. European Journal of Mass Spectrometry, IM Publications, 2013, 19 (3), pp.141-149. ⟨10.1255/ejms.122⟩. ⟨hal-00873924⟩
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2012

Journal articles

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Romain Simon, Quentin Enjalbert, Jordane Biarc, Jérôme Lemoine, Arnaud Salvador. Evaluation of hydrophilic interaction chromatography (HILIC) versus C-18 reversed-phase chromatography for targeted quantification of peptides by mass spectrometry. Journal of Chromatography A, Elsevier, 2012, 1264, pp.31-39. ⟨10.1016/j.chroma.2012.09.059⟩. ⟨hal-00875257⟩
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Romain Simon, Marion Girod, Catherine Fonbonne, Arnaud Salvador, Yohann Clément, et al.. Total ApoE and ApoE4 isoform assays in an alzheimer's disease case-control study by targeted mass spectrometry (n=669): a pilot assay for methionine-containing proteotypic peptides. Molecular and Cellular Proteomics, American Society for Biochemistry and Molecular Biology, 2012, 11 (11), pp.1389-1403. ⟨10.1074/mcp.M112.018861⟩. ⟨hal-00875286⟩
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Jérôme Lemoine, Tanguy Fortin, Arnaud Salvador, Aurore Jaffuel, Jean-Philippe Charrier, et al.. The current status of clinical proteomics and the use of MRM and MRM3 for biomarker validation. Expert Review of Molecular Diagnostics, Expert Reviews (formerly Future Drugs), 2012, 12 (4), pp.333-342. ⟨10.1586/ERM.12.32⟩. ⟨hal-00875727⟩
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Florent Calvo, Fabien Chirot, Florian Albrieux, Jérôme Lemoine, Yury O. Tsybin, et al.. The current status of clinical proteomics and the use of MRM and MRM(3) for biomarker validation.. Expert Review of Molecular Diagnostics, Expert Reviews (formerly Future Drugs), 2012, 12 (4), pp.333-42. ⟨10.1586/erm.12.32⟩. ⟨hal-00873914⟩
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Claire Brunet, Rodolphe Antoine, Jérôme Lemoine, Philippe Dugourd. Soret band of the gas-phase ferri-cytochrome c. Journal of Physical Chemistry Letters, American Chemical Society, 2012, 3 (6), pp.698-702. ⟨10.1021/jz300070r⟩. ⟨hal-00875736⟩
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Fabien Chirot, Florent Calvo, Florian Albrieux, Jérôme Lemoine, Yury O. Tsybin, et al.. Statistical analysis of ion mobility spectrometry. I. unbiased and guided replica-exchange molecular dynamics. Journal of The American Society for Mass Spectrometry, Springer Verlag (Germany), 2012, 23 (2), pp.386-396. ⟨10.1007/s13361-011-0281-y⟩. ⟨hal-00873906⟩
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Floriane Pailleux, Jérôme Lemoine, Francis Beaudry. Quantitative mass Spectrometry analysis reveals that deletion of the TRPV1 receptor in mice alters substance P and Neurokinin A expression in the central nervous system. Neurochemical Research, Springer Verlag, 2012, 37 (12), pp.2678-2685. ⟨10.1007/s11064-012-0856-4⟩. ⟨hal-00875718⟩
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Quentin Enjalbert, Amandine Racaud, Jérôme Lemoine, Sébastien Redon, Mehmet Menaf Ayhan, et al.. Optical properties of a visible push-pull chromophore covalently bound to carbohydrates: solution and gas-phase spectroscopy combined to theoretical Investigations. Journal of Physical Chemistry B, American Chemical Society, 2012, 116 (2), pp.841-851. ⟨10.1021/jp2099015⟩. ⟨hal-00875784⟩
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Marion Girod, Claire Brunet, Rodolphe Antoine, Jérôme Lemoine, Philippe Dugourd, et al.. Efficient structural characterization of poly(methacrylic acid) by activated-electron photodetachment dissociation.. Journal of The American Society for Mass Spectrometry, Springer Verlag (Germany), 2012, 23 (1), pp.7-11. ⟨10.1007/s13361-011-0279-5⟩. ⟨hal-00875927⟩
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Bruno Bellina, Isabelle Compagnon, Luke Macaleese, Fabien Chirot, Jérôme Lemoine, et al.. Binding motifs of silver in prion octarepeat model peptides: a joint ion mobility, IR and UV spectroscopies, and theoretical approach. Physical Chemistry Chemical Physics, Royal Society of Chemistry, 2012, 14 (32), pp.11433-11440. ⟨10.1039/c2cp40924k⟩. ⟨hal-00873876⟩
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Fabien Chirot, Jérôme Lemoine, Luke Mac Aleese, Philippe Dugourd. Spectrométrie par mobilité ionique et agrégation des protéines. Spectra Analyse, Paris : PCI, 2012, 285, pp.64. ⟨hal-00963599⟩
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2011

Journal articles

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Quentin Enjalbert, Romain Simon, Arnaud Salvador, Rodolphe Antoine, Sébastien Redon, et al.. Photo-SRM: laser-induced dissociation improves detection selectivity of Selected Reaction Monitoring mode.. Rapid Communications in Mass Spectrometry, Wiley, 2011, 25 (22), pp.3375-0081. ⟨10.1002/rcm.5232⟩. ⟨hal-00875933⟩
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Marion Girod, Rodolphe Antoine, Jérôme Lemoine, Philippe Dugourd, Laurence Charles. End-group characterization of poly(styrene sulfonate sodium salt) by activated electron photo-detachment dissociation.. Rapid Communications in Mass Spectrometry, Wiley, 2011, 25 (21), pp.3259-3266. ⟨10.1002/rcm.5228⟩. ⟨hal-00875937⟩
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Julien de Winter, Vincent Lemaur, Renaud Ballivian, Fabien Chirot, Olivier Coulembier, et al.. Size dependence of the folding of multiply charged sodium cationized polylactides revealed by ion mobility mass spectrometry and molecular modelling. Chemistry - A European Journal, Wiley-VCH Verlag, 2011, 17 (35), pp.9738-9745. ⟨10.1002/chem.201100383⟩. ⟨hal-00875409⟩
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Florian Albrieux, Hisham Ben Hamidane, Florent Calvo, Fabien Chirot, Yury O. Tsybin, et al.. Structural preferences of gas-phase M2TMP monomers upon sequence variations. Journal of Physical Chemistry A, American Chemical Society, 2011, 115 (18), pp.4711-4718. ⟨10.1021/jp110732⟩. ⟨hal-00875402⟩
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Francis Canon, Renaud Ballivian, Fabien Chirot, Rodolphe Antoine, Pascale Sarni-Manchado, et al.. Folding of a salivary intrinsically disordered protein upon binding to tannins. Journal of the American Chemical Society, American Chemical Society, 2011, 133 (20), pp.7847-7852. ⟨10.1021/ja200534f⟩. ⟨hal-00875405⟩
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