2020

Journal articles

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Julien Faugere, Duarte Gouveia, Sophie Ayciriex, Arnaud Chaumot, Christine Almunia, et al.. High-multiplexed monitoring of protein biomarkers in the sentinel Gammarus fossarum by targeted scout-MRM assay, a new vision for ecotoxicoproteomics. Journal of Proteomics, Elsevier, 2020, 226, pp.103901. ⟨10.1016/j.jprot.2020.103901⟩. ⟨hal-02903090⟩

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Arnaud Salvador, Romain Carrière, Sophie Ayciriex, Christelle Margoum, Yves Leblanc, et al.. Scout-multiple reaction monitoring: A liquid chromatography tandem mass spectrometry approach for multi-residue pesticide analysis without time scheduling. Journal of Chromatography A, Elsevier, 2020, 1621, pp.461046. ⟨10.1016/j.chroma.2020.461046⟩. ⟨hal-02771252⟩

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Maxime Leprêtre, Christine Almunia, Jean Armengaud, Antoine Le Guernic, Arnaud Salvador, et al.. Identification of immune-related proteins of Dreissena polymorpha hemocytes and plasma involved in host-microbe interactions by differential proteomics. Scientific Reports, Nature Publishing Group, 2020, 10 (1), ⟨10.1038/s41598-020-63321-z⟩. ⟨hal-02608535⟩

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Sophie Ayciriex, Romain Carrière, Chloé Bardet, Yves Le Blanc, Arnaud Salvador, et al.. Streamlined Development of Targeted Mass Spectrometry‐Based Method Combining Scout‐MRM and a Web‐Based Tool Indexed with Scout Peptides. Proteomics, Wiley-VCH Verlag, 2020, pp.1900254. ⟨10.1002/pmic.201900254⟩. ⟨hal-02436928⟩

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Tingting Fu, Janina Oetjen, Manuel Chapelle, Alexandre Verdu, Matthias Szesny, et al.. In situ isobaric lipid mapping by MALDI-Ion Mobility Separation-Mass Spectrometry Imaging. Journal of Mass Spectrometry, Wiley-Blackwell, 2020, pp.e4531. ⟨10.1002/jms.4531⟩. ⟨hal-02548898⟩

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Maxime Leprêtre, Mélissa Palos-Ladeiro, Julien Faugere, Christine Almunia, Jérôme Lemoine, et al.. From shotgun to targeted proteomics: rapid Scout-MRM assay development for monitoring potential immunomarkers in Dreissena polymorpha. Analytical and Bioanalytical Chemistry, Springer Verlag, 2020, pp.Early Access. ⟨10.1007/s00216-020-02868-2⟩. ⟨hal-02925888⟩

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2019

Journal articles

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Aidamalia Vargas-Lowman, David Armisen, Carla Fernanda Burguez Floriano, Isabelle da Rocha Silva Cordeiro, Séverine Viala, et al.. Cooption of the pteridine biosynthesis pathway underlies the diversification of embryonic colors in water striders. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2019, 116 (38), pp.19046-19054. ⟨10.1073/pnas.1908316116⟩. ⟨hal-02392013⟩

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Maxime Lepretre, Christine Almunia, Jean Armengaud, Arnaud Salvador, Alain Geffard, et al.. The immune system of the freshwater zebra mussel, Dreissena polymorpha, decrypted by proteogenomics of hemocytes and plasma compartments. Journal of Proteomics, Elsevier, 2019, 202, pp.103366. ⟨10.1016/j.jprot.2019.04.016⟩. ⟨hal-02108964⟩

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Duarte Gouveia, Christine Almunia, Yannick Cogne, Olivier Pible, Davide Degli-Esposti, et al.. Ecotoxicoproteomics: A decade of progress in our understanding of anthropogenic impact on the environment. Journal of Proteomics, Elsevier, 2019, 198, pp.66-77. ⟨10.1016/j.jprot.2018.12.001⟩. ⟨hal-02109172⟩

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2018

Journal articles

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Aurore Charnot, Duarte Gouveia, Sophie Ayciriex, Jérôme Lemoine, Jean Armengaud, et al.. On-Line Solid Phase Extraction Liquid Chromatography-Mass Spectrometry Method for Multiplexed Proteins Quantitation in an Ecotoxicology Test Specie: Gammarus fossarum. Journal of Applied Bioanalysis, Betasciencepress Publishers, 2018, 4 (3), pp.81-101. ⟨10.17145/jab.18.012⟩. ⟨hal-01860702⟩

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2017

Journal articles

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Duarte Gouveia, Arnaud Chaumot, Aurore Charnot, Christine Almunia, Adeline François, et al.. Ecotoxico-Proteomics for Aquatic Environmental Monitoring: First in Situ Application of a New Proteomics-Based Multibiomarker Assay Using Caged Amphipods. Environmental Science & Technology, American Chemical Society, 2017, 51 (22), pp.13417-13426. ⟨10.1021/acs.est.7b03736⟩. ⟨hal-01663631⟩

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D. Gouveia, A. Chaumot, A. Charnot, H. Quéau, J. Armengaud, et al.. Assessing the relevance of a multiplexed methodology for proteomic biomarker measurement in the invertebrate species Gammarus fossarum : A physiological and ecotoxicological study. Aquatic Toxicology, Elsevier, 2017, 190, pp.199 - 209. ⟨10.1016/j.aquatox.2017.07.007⟩. ⟨hal-01682339⟩

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Aurore Charnot, Duarte Gouveia, Jean Armengaud, Christine Almunia, Arnaud Chaumot, et al.. Multiplexed assay for protein quantitation in the invertebrate Gammarus fossarum by liquid chromatography coupled to tandem mass spectrometry. Analytical and Bioanalytical Chemistry, Springer Verlag, 2017, 409 (16), pp.3969-3991. ⟨10.1007/s00216-017-0348-0⟩. ⟨hal-01539762⟩

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2016

Journal articles

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Alexandra Gaubert, Jéremy Jeudy, Blandine Rougemont, Claire Bordes, Jérôme Lemoine, et al.. Identification and absolute quantification of enzymes in laundry detergents by liquid chromatography tandem mass spectrometry. Analytical and Bioanalytical Chemistry, Springer Verlag, 2016, 408 (17), pp.4669-4681. ⟨10.1007/s00216-016-9550-8⟩. ⟨hal-01356216⟩

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Blandine Rougemont, Catherine Fonbonne, Jérôme Lemoine, Vanessa Bourgeaux, Arnaud Salvador. Liquid chromatography coupled to tandem mass spectrometry for the analysis of inositol hexaphosphate after solid-phase extraction. Journal of Liquid Chromatography and Related Technologies, Taylor & Francis: STM, Behavioural Science and Public Health Titles, 2016, 39 (8), pp.408-414. ⟨10.1080/10826076.2016.1169427⟩. ⟨hal-01356192⟩

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2015

Journal articles

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Blandine Rougemont, Romain Simon, Romain Carrière, Jordane Biarc, Catherine Fonbonne, et al.. Absolute quantification of dengue virus serotype 4 chimera vaccine candidate in Vero cell culture by targeted mass spectrometry. Proteomics, Wiley-VCH Verlag, 2015, 15 (19), pp.3320-3330. ⟨10.1002/pmic.201500101⟩. ⟨hal-01229336⟩

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Yannick Charretier, Olivier Dauwalder, Christine Franceschi, Elodie Degout-Charmette, Gilles Zambardi, et al.. Rapid bacterial identification, resistance, virulence and type profiling using selected reaction monitoring mass spectrometry. Scientific Reports, Nature Publishing Group, 2015, 5, pp.Article Number: 13944. ⟨10.1038/srep13944⟩. ⟨hal-01229864⟩

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Jordane Biarc, Romain Simon, Catherine Fonbonne, Jean-François Léonard, Jean-Charles Gauthier, et al.. Absolute quantification of podocalyxin, a potential biomarker of glomerular injury in human urine, by liquid chromatography-mass spectrometry. Journal of Chromatography A, Elsevier, 2015, 1397, pp.81-85. ⟨10.1016/j.chroma.2015.04.003⟩. ⟨hal-01164871⟩

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2014

Journal articles

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Judith Trapp, Jean Armengaud, Arnaud Salvador, Arnaud Chaumot, Olivier Geffard. Next-generation proteomics: toward customized biomarkers for environmental biomonitoring. Environmental Science & Technology, American Chemical Society, 2014, 48 (23), pp.13560-13572. ⟨10.1021/es501673s⟩. ⟨hal-01230133⟩

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Romain Simon, Sébastien Passeron, Jérôme Lemoine, Arnaud Salvador. Hydrophilic interaction liquid chromatography as second dimension in multidimensional chromatography with an anionic trapping strategy: application to prostate-specific antigen quantification.. Journal of Chromatography A, Elsevier, 2014, 1354, pp.75-84. ⟨10.1016/j.chroma.2014.05.063⟩. ⟨hal-01071821⟩

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Quentin Enjalbert, Marion Girod, Jérémy Jeudy, Jordane Biarc, Romain Simon, et al.. Combined collision-induced dissociation and photo-selected reaction monitoring mass spectrometry modes for simultaneous analysis of coagulation factors and estrogens. Journal of Pharmaceutical Analysis, Elsevier B.V. on behalf of Xi'an Jiaotong University, 2014, 4 (3), pp.183-189. ⟨10.1016/j.jpha.2013.09.004⟩. ⟨hal-01356364⟩

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Romain Simon, Jérôme Lemoine, Catherine Fonbonne, Aurore Jaffuel, Jean-François Léonard, et al.. Absolute quantification of podocin, a potential biomarker of glomerular injury in human urine, by liquid chromatography-multiple reaction monitoring cubed mass spectrometry. Journal of Pharmaceutical and Biomedical Analysis, Elsevier, 2014, 94, pp.84-91. ⟨10.1016/j.jpba.2014.01.019⟩. ⟨hal-00954969⟩

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Yuefei Ji, Corinne Ferronato, Arnaud Salvador, Xi Yang, Jean-Marc Chovelon. Degradation of ciprofloxacin and sulfamethoxazole by ferrous-activated persulfate: implications for remediation of groundwater contaminated by antibiotics.. Science of the Total Environment, Elsevier, 2014, 472, pp.800-808. ⟨10.1016/j.scitotenv.2013.11.008⟩. ⟨hal-00967478⟩

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Jéremy Jeudy, Arnaud Salvador, Romain Simon, Aurore Jaffuel, Catherine Fonbonne, et al.. Overcoming biofluid protein complexity during targeted mass spectrometry detection and quantification of protein biomarkers by MRM cubed (MRM3). Analytical and Bioanalytical Chemistry, Springer Verlag, 2014, 406 (4), pp.1193-1200. ⟨10.1007/s00216-013-7266-6⟩. ⟨hal-00954963⟩

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R. Hazime, Q. H. Nguyen, Corinne Ferronato, Arnaud Salvador, F. Jaber, et al.. Comparative study of imazalil degradation in three systems: UV/TiO2, UV/K2S2O8 and UV/TiO2/K2S2O8. Applied Catalysis B: Environmental, Elsevier, 2014, 144, pp.286-291. ⟨10.1016/j.apcatb.2013.07.001⟩. ⟨hal-00905725⟩

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Marion Girod, Jordane Biarc, Quentin Enjalbert, Arnaud Salvador, Rodolphe Antoine, et al.. Implementing visible 473 nm photodissociation in a Q-Exactive mass spectrometer: towards specific detection of cysteine-containing peptides. Analyst, Royal Society of Chemistry, 2014, 139 (21), pp.5523-5530. ⟨10.1039/C4AN00956H⟩. ⟨hal-01345989⟩

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2013

Journal articles

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Aurore Jaffuel, Jérôme Lemoine, Catherine Aubert, Romain Simon, Jean-Francois Léonard, et al.. Optimization of liquid chromatography-multiple reaction monitoring cubed mass spectrometry assay for protein quantification: Application to aquaporin-2 water channel in human urine. Journal of Chromatography A, Elsevier, 2013, 1301, pp.122-130. ⟨10.1016/j.chroma.2013.05.068⟩. ⟨hal-00860529⟩

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Quentin Enjalbert, Marion Girod, Romain Simon, Jéremy Jeudy, Fabien Chirot, et al.. Improved detection specificity for plasma proteins by targeting cysteine-containing peptides with photo-SRM. Analytical and Bioanalytical Chemistry, Springer Verlag, 2013, 405 (7), pp.2321-2331. ⟨10.1007/s00216-012-6603-5⟩. ⟨hal-00875276⟩

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Yuefei Jia, Lei Zhou, Corinne Ferronato, Xi Yang, Arnaud Salvador, et al.. Photocatalytic degradation of atenolol in aqueous titanium dioxide suspensions: Kinetics, intermediates and degradation pathways. Journal of Photochemistry and Photobiology A: Chemistry, Elsevier, 2013, 254, pp.35-44. ⟨10.1016/j.jphotochem.2013.01.003⟩. ⟨hal-00875267⟩

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Arnaud Vernier, Fabien Chirot, Rodolphe Antoine, Arnaud Salvador, Jean-Philippe Charrier, et al.. Alternative representation for the stability diagram of quadrupole ion traps upon additional quadrupolar excitation. European Journal of Mass Spectrometry, IM Publications, 2013, 19 (3), pp.141-149. ⟨10.1255/ejms.1227⟩. ⟨hal-00873924⟩

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Yuefei Ji, Lei Zhou, Corinne Ferronato, Arnaud Salvador, Xi Yang, et al.. Degradation of sunscreen agent 2-phenylbenzimidazole-5-sulfonic acid by TiO2 photocatalysis: Kinetics, photoproducts and comparison to structurally related compounds. Applied Catalysis B: Environmental, Elsevier, 2013, 140, pp.457-467. ⟨10.1016/j.apcatb.2013.04.046⟩. ⟨hal-00860548⟩

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2012

Journal articles

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Romain Simon, Marion Girod, Catherine Fonbonne, Arnaud Salvador, Yohann Clément, et al.. Total ApoE and ApoE4 isoform assays in an alzheimer's disease case-control study by targeted mass spectrometry (n=669): a pilot assay for methionine-containing proteotypic peptides. Molecular and Cellular Proteomics, American Society for Biochemistry and Molecular Biology, 2012, 11 (11), pp.1389-1403. ⟨10.1074/mcp.M112.018861⟩. ⟨hal-00875286⟩

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Romain Simon, Quentin Enjalbert, Jordane Biarc, Jérôme Lemoine, Arnaud Salvador. Evaluation of hydrophilic interaction chromatography (HILIC) versus C-18 reversed-phase chromatography for targeted quantification of peptides by mass spectrometry. Journal of Chromatography A, Elsevier, 2012, 1264, pp.31-39. ⟨10.1016/j.chroma.2012.09.059⟩. ⟨hal-00875257⟩

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Guillaume Jubeaux, Romain Simon, Arnaud Salvador, Christelle Lopes, Emilie Lacaze, et al.. Vitellogenin-like protein measurement in caged Gammarus fossarum males as a biomarker of endocrine disruptor exposure: Inconclusive experience. Aquatic Toxicology, Elsevier, 2012, 122, pp.9-18. ⟨10.1016/j.aquatox.2012.05.007⟩. ⟨hal-00875205⟩

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R. Hazime, Corinne Ferronato, Ludovic Fine, Arnaud Salvador, F. Jaber, et al.. Photocatalytic degradation of imazalil in an aqueous suspension of TiO2 and influence of alcohols on the degradation. Applied Catalysis B: Environmental, Elsevier, 2012, 126, pp.90-99. ⟨10.1016/j.apcatb.2012.07.007⟩. ⟨hal-00915160⟩

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Guillaume Jubeaux, Fabien Audouard-Combe, Romain Simon, Renaud Tutundjian, Arnaud Salvador, et al.. Vitellogenin-like proteins among invertebrate species diversity: potential of proteomic mass spectrometry for biomarker development. Environmental Science and Technology, American Chemical Society, 2012, 46 (11), pp.6315-6323. ⟨10.1021/es300550h⟩. ⟨hal-00875198⟩

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Guillaume Jubeaux, Romain Simon, Arnaud Salvador, Hervé Quéau, Arnaud Chaumot, et al.. Vitellogenin-like proteins in the freshwater amphipod Gammarus fossarum (Koch, 1835): Functional characterization throughout reproductive process, potential for use as an indicator of oocyte quality and endocrine disruption biomarker in males. Aquatic Toxicology, Elsevier, 2012, 112-113, pp.72-82. ⟨10.1016/j.aquatox.2012.01.011⟩. ⟨hal-00697838⟩

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Jérôme Lemoine, Tanguy Fortin, Arnaud Salvador, Aurore Jaffuel, Jean-Philippe Charrier, et al.. The current status of clinical proteomics and the use of MRM and MRM(3) for biomarker validation.. Expert Review of Molecular Diagnostics, Expert Reviews (formerly Future Drugs), 2012, 12 (4), pp.333-42. ⟨10.1586/erm.12.32⟩. ⟨hal-00873914⟩

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Jérôme Lemoine, Tanguy Fortin, Arnaud Salvador, Aurore Jaffuel, Jean-Philippe Charrier, et al.. The current status of clinical proteomics and the use of MRM and MRM3 for biomarker validation. Expert Review of Molecular Diagnostics, Expert Reviews (formerly Future Drugs), 2012, 12 (4), pp.333-342. ⟨10.1586/ERM.12.32⟩. ⟨hal-00875727⟩

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Anne Piram, René Faure, Henry Chermette, Claire Bordes, Bernard Herbreteau, et al.. Photochemical behaviour of propranolol in environmental waters: the hydroxylated photoproducts. International Journal of Environmental Analytical Chemistry, Taylor & Francis, 2012, 92 (1), pp.96-109. ⟨10.1080/03067319.2010.497920⟩. ⟨hal-00876038⟩

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2011

Journal articles

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Quentin Enjalbert, Romain Simon, Arnaud Salvador, Rodolphe Antoine, Sébastien Redon, et al.. Photo-SRM: laser-induced dissociation improves detection selectivity of Selected Reaction Monitoring mode.. Rapid Communications in Mass Spectrometry, Wiley, 2011, 25 (22), pp.3375-0081. ⟨10.1002/rcm.5232⟩. ⟨hal-00875933⟩

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